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1

The real-time polymerase chain reaction

Mikael Kubista, José Manuel Andrade, Martin Bengtsson, Amin Forootan, Jiri Jonák, Kristina Lind, Radek Sindelka, Robert Sjöback, Björn Sjögreen, Linda Strömbom, Anders Ståhlberg, Neven Zoric

Journal:

Molecular Aspects of Medicine

Year:

2006

Language:

english

File:

PDF, 597 KB

english, 2006

2

Iterative methods for stationary solutions to the steady-state compressible Navier-Stokes equations

Björn Sjögreen

Journal:

Computers & Fluids

Year:

1992

Language:

english

File:

PDF, 1.08 MB

english, 1992

3

Low dissipative high-order numerical simulations of supersonic reactive flows

Björn Sjögreen, H. C. Yee

Journal:

International Journal for Numerical Methods in Fluids

Year:

2003

Language:

english

File:

PDF, 9.31 MB

english, 2003

4

High Order Centered Difference Methods for the Compressible Navier-Stokes Equations

Björn Sjögreen

Journal:

Journal of Computational Physics

Year:

1995

File:

PDF, 442 KB

1995

5

Numerical Experiments with the Multiresolution Scheme for the Compressible Euler Equations

Björn Sjögreen

Journal:

Journal of Computational Physics

Year:

1995

File:

PDF, 451 KB

1995

6

Conservative and non-conservative interpolation between overlapping grids for finite volume solutions of hyperbolic problems

Eva Pärt-Enander, Björn Sjögreen

Journal:

Computers & Fluids

Year:

1994

Language:

english

File:

PDF, 1.70 MB

english, 1994

7

Perfectly matched layers for Maxwell’s equations in second order formulation

Björn Sjögreen, N. Anders Petersson

Journal:

Journal of Computational Physics

Year:

2005

Language:

english

File:

PDF, 893 KB

english, 2005

8

Efficient Low Dissipative High Order Schemes for Multiscale MHD Flows, II: Minimization of ∇·B Numerical Error

H. C. Yee, Björn Sjögreen

Journal:

Journal of Scientific Computing

Year:

2006

Language:

english

File:

PDF, 1008 KB

english, 2006

9

Assessment of high-resolution methods for numerical simulations of compressible turbulence with shock waves

Eric Johnsen, Johan Larsson, Ankit V. Bhagatwala, William H. Cabot, Parviz Moin, Britton J. Olson, Pradeep S. Rawat, Santhosh K. Shankar, Björn Sjögreen, H.C. Yee, Xiaolin Zhong, Sanjiva K. Lele

Journal:

Journal of Computational Physics

Year:

2010

Language:

english

File:

PDF, 1.44 MB

english, 2010

10

A Fourth Order Accurate Finite Difference Scheme for the Elastic Wave Equation in Second Order Formulation

Björn Sjögreen, N. Anders Petersson

Journal:

Journal of Scientific Computing

Year:

2012

Language:

english

File:

PDF, 2.40 MB

english, 2012

11

High order finite difference methods with subcell resolution for advection equations with stiff source terms

Wei Wang, Chi-Wang Shu, H.C. Yee, Björn Sjögreen

Journal:

Journal of Computational Physics

Year:

2012

Language:

english

File:

PDF, 2.61 MB

english, 2012

12

Source Estimation by Full Wave Form Inversion

Sjögreen, Björn, Petersson, N. Anders

Journal:

Journal of Scientific Computing

Year:

2014

Language:

english

File:

PDF, 3.21 MB

english, 2014

13

On high order finite-difference metric discretizations satisfying GCL on moving and deforming grids

Sjögreen, Björn, Yee, H.C., Vinokur, Marcel

Journal:

Journal of Computational Physics

Year:

2014

Language:

english

File:

PDF, 254 KB

english, 2014

14

Stable Difference Approximations for the Elastic Wave Equation in Second Order Formulation

Stefan Nilsson, N. Anders Petersson, Björn Sjögreen and Heinz-Otto Kreiss

Journal:

SIAM Journal on Numerical Analysis

Year:

2007

Language:

english

File:

PDF, 2.37 MB

english, 2007

15

Comparative Study of Three High Order Schemes for LES of Temporally Evolving Mixing Layers

Yee, Helen C., Sjögreen, Bjorn, Hadjadj, Abdellah

Journal:

Communications in Computational Physics

Year:

2012

Language:

english

File:

PDF, 2.26 MB

english, 2012

16

Stability of Finite Difference Discretizations of Multi-Physics Interface Conditions

Sjögreen, Björn, Banks, Jeffrey W.

Journal:

Communications in Computational Physics

Year:

2013

Language:

english

File:

PDF, 366 KB

english, 2013

17

Methods to determine limit of detection and limit of quantification in quantitative real-time PCR (qPCR)

Forootan, Amin, Sjöback, Robert, Björkman, Jens, Sjögreen, Björn, Linz, Lucas, Kubista, Mikael

Journal:

Biomolecular Detection and Quantification

Year:

2017

Language:

english

File:

PDF, 542 KB

english, 2017

18

Broadband (0–5 Hz) Fully Deterministic 3D Ground‐Motion Simulations of a Magnitude 7.0 Hayward Fault Earthquake: Comparison with Empirical Ground‐Motion Models and 3D Path and Site Effects from Source Normalized Intensities

Rodgers, Arthur J., Anders Petersson, N., Pitarka, Arben, McCallen, David B., Sjogreen, Bjorn, Abrahamson, Norman

Journal:

Seismological Research Letters

Year:

2019

Language:

english

File:

PDF, 25.43 MB

english, 2019

19

A Cartesian Embedded Boundary Method for

Marco Kupiainen, Björn Sjögreen

Journal:

Journal of Scientific Computing

Year:

2009

Language:

english

File:

PDF, 1.35 MB

english, 2009

20

High-order well-balanced schemes and applications to non-equilibrium flow

Wei Wang, Chi-Wang Shu, H.C. Yee, Björn Sjögreen

Journal:

Journal of Computational Physics

Year:

2009

Language:

english

File:

PDF, 1.41 MB

english, 2009

21

Construction of low dissipative high-order well-balanced filter schemes for non-equilibrium flows

Wei Wang, H.C. Yee, Björn Sjögreen, Thierry Magin, Chi-Wang Shu

Journal:

Journal of Computational Physics

Year:

2011

Language:

english

File:

PDF, 2.28 MB

english, 2011

22

Determination of Protolytic Constants by Trilinear Fluorescence Spectroscopy

Mikael Kubista, Ismail Hassan Ismail, Amin Forootan, Björn Sjögreen

Journal:

Journal of Fluorescence

Year:

2004

Language:

english

File:

PDF, 1012 KB

english, 2004

23

LES of temporally evolving mixing layers by an eighth-order filter scheme

Abdellah Hadjadj, Helen C. Yee, Bjorn Sjögreen

Journal:

International Journal for Numerical Methods in Fluids

Year:

2012

Language:

english

File:

PDF, 6.84 MB

english, 2012

24

High Order Finite Difference and Finite Volume Methods for Advection on the Sphere

Björn Sjögreen

Journal:

Journal of Scientific Computing

Year:

2012

Language:

english

File:

PDF, 2.75 MB

english, 2012

25

Multiway real-time PCR gene expression profiling in yeastSaccharomyces cerevisiaereveals altered transcriptional response ofADH-genes to glucose stimuli

Anders Ståhlberg, Karin Elbing, José Manuel Andrade-Garda, Björn Sjögreen, Amin Forootan, Mikael Kubista

Journal:

Year:

2008

Language:

english

File:

PDF, 963 KB

english, 2008

26

Gene expression profiling – Clusters of possibilities

Anders Bergkvist, Vendula Rusnakova, Radek Sindelka, Jose Manuel Andrade Garda, Björn Sjögreen, Daniel Lindh, Amin Forootan, Mikael Kubista

Journal:

Year:

2010

Language:

english

File:

PDF, 1.44 MB

english, 2010

27

Simulation of topographic effects on seismic waves from shallow explosions near the North Korean nuclear test site with emphasis on shear wave generation

Rodgers, Arthur J., Petersson, N. Anders, Sjogreen, Bjorn

Journal:

Journal of Geophysical Research

Year:

2010

Language:

english

File:

PDF, 3.76 MB

english, 2010

28

[American Institute of Aeronautics and Astronautics 42nd AIAA Plasmadynamics and Lasers Conference - Honolulu, Hawaii ()] 42nd AIAA Plasmadynamics and Lasers Conference - Variable high-order multiblock overlapping grid methods for mixed steady and unsteady multiscale viscous flows, part II: hypersonic nonequilibrium flows

Lani, Andrea, Sjogreen, Bjorn, Yee, Helen, Henshaw, William

Year:

2011

Language:

english

File:

PDF, 2.48 MB

english, 2011

29

[American Institute of Aeronautics and Astronautics 16th AIAA Computational Fluid Dynamics Conference - Orlando, Florida ()] 16th AIAA Computational Fluid Dynamics Conference - Efficient Low Dissipative High Order Schemes for Multiscale MHD Flows, I: Basic Theory

Sjogreen, Bjorn, Yee, H.

Year:

2003

Language:

english

File:

PDF, 9.54 MB

english, 2003

30

The Convergence Rate of Finite Difference Schemes in the Presence of Shocks

Bjorn Engquist and Bjorn Sjogreen

Journal:

SIAM Journal on Numerical Analysis

Year:

1998

Language:

english

File:

PDF, 1.25 MB

english, 1998

31

Stable Difference Approximations for the Elastic Wave Equation in Second Order Formulation

Nilsson, Stefan, Petersson, N. Anders, Sjögreen, Björn, Kreiss, Heinz-Otto

Journal:

SIAM Journal on Numerical Analysis

Year:

2007

Language:

english

File:

PDF, 481 KB

english, 2007

32

High Order Finite Difference Methods with Subcell Resolution for Stiff Multispecies Discontinuity Capturing

Wang, Wei, Shu, Chi-Wang, Yee, H.C., Kotov, Dmitry V., Sjögreen, Björn

Journal:

Communications in Computational Physics

Year:

2015

Language:

english

File:

PDF, 771 KB

english, 2015

33

A Model for Peak Formation in the Two-Phase Equations

Björn Sjögreen, Katarina Gustavsson and Reynir Levi Gudmundsson

Journal:

Mathematics of Computation

Year:

2007

Language:

english

File:

PDF, 960 KB

english, 2007

34

Nonlinear Filters for Efficient Shock Computation

Björn Engquist, Per Lötstedt and Björn Sjögreen

Journal:

Mathematics of Computation

Year:

1989

Language:

english

File:

PDF, 600 KB

english, 1989

35

[American Institute of Aeronautics and Astronautics 50th AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition - Nashville, Tennessee ()] 50th AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition - LES of Temporally Evolving Mixing Layers by an Eighth-Order Filter Scheme

Hadjadj, Abdellah, Yee, Helen, Sjogreen, Bjorn

Language:

english

File:

PDF, 3.69 MB

english

36

Numerical Investigation of Deflagration to Detonation Transitions

Tegnér, Jon, Sjögreen, Björn

Journal:

Combustion Science and Technology

Year:

2002

Language:

english

File:

PDF, 819 KB

english, 2002

37

Discretizing singular point sources in hyperbolic wave propagation problems

Petersson, N. Anders, O'Reilly, Ossian, Sjögreen, Björn, Bydlon, Samuel

Journal:

Journal of Computational Physics

Year:

2016

Language:

english

File:

PDF, 804 KB

english, 2016

38

A cartesian grid embedded boundary method for the compressible Navier–Stokes equations

Graves, Daniel, Colella, Phillip, Modiano, David, Johnson, Jeffrey, Sjogreen, Bjorn, Gao, Xinfeng

Journal:

Communications in Applied Mathematics and Computational Science

Year:

2013

Language:

english

File:

PDF, 1.85 MB

english, 2013

39

Super-Grid Modeling of the Elastic Wave Equation in Semi-Bounded Domains

Petersson, N. Anders, Sjögreen, Björn

Journal:

Communications in Computational Physics

Year:

2014

Language:

english

File:

PDF, 775 KB

english, 2014

40

Corrigendum to “On High Order Finite-Difference Metric Discretizations Satisfying GCL on Moving and Deforming Grids” [J. Comput. Phys. 265 (2014) 211–220]

Sjögreen, Björn, Yee, H.C., Vinokur, Marcel

Journal:

Journal of Computational Physics

Year:

2017

Language:

english

File:

PDF, 133 KB

english, 2017

41

Recent Developments in Accuracy and Stability Improvement of Nonlinear Filter Methods for DNS and LES of Compressible Flows

Yee, H.C., Sjögreen, Björn

Journal:

Computers & Fluids

Year:

2017

Language:

english

File:

PDF, 2.02 MB

english, 2017

42

[American Institute of Aeronautics and Astronautics 50th AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition - Nashville, Tennessee ()] 50th AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition - Comparative Study of Three High Order Methods for LES of Temporally Evolving Mixing Layers

Yee, Helen, Sjogreen, Bjorn, Hadjadj, Abdellah

Language:

english

File:

PDF, 5.02 MB

english

43

Accuracy Consideration by DRP Schemes for DNS and LES of Compressible Flow Computations

Sjögreen, Björn, Yee, H.C.

Journal:

Computers & Fluids

Year:

2017

Language:

english

File:

PDF, 2.25 MB

english, 2017

44

Skew-Symmetric Splitting and Stability of High Order Central Schemes

Sjögreen, Björn, Yee, H.C., Kotov, Dmitry

Journal:

Journal of Physics Conference Series

Year:

2017

Language:

english

File:

PDF, 2.41 MB

english, 2017

45

Corrigendum to “Numerical dissipation control in high order shock-capturing schemes for LES of low speed flows” [J. Comput. Phys. 307 (2016) 189–202]

Kotov, D.V., Yee, H.C., Wray, A.A., Sjögreen, Björn, Kritsuk, A.G.

Journal:

Journal of Computational Physics

Year:

2018

Language:

english

File:

PDF, 137 KB

english, 2018

46

Broadband (0-4 Hz) Ground Motions for a Magnitude 7.0 Hayward Fault Earthquake with 3D Structure and Topography

Rodgers, Arthur J., Pitarka, Arben, Anders Petersson, N., Sjogreen, Bjorn, McCallen, David B.

Journal:

Geophysical Research Letters

Year:

2018

Language:

english

File:

PDF, 1.10 MB

english, 2018

47

High order entropy conservative central schemes for wide ranges of compressible gas dynamics and MHD flows

Sjögreen, Björn, Yee, H.C.

Journal:

Journal of Computational Physics

Year:

2018

Language:

english

File:

PDF, 4.11 MB

english, 2018

48

Re-print of Accuracy consideration by DRP schemes for DNS and LES of compressible flow computations

Sjögreen, Björn, Yee, H.C.

Journal:

Computers & Fluids

Year:

2018

Language:

english

File:

PDF, 2.19 MB

english, 2018

49

Toward Exascale Earthquake Ground Motion Simulations for Near-Fault Engineering Analysis

Johansen, Hans, Rodgers, Arthur, Petersson, N. Anders, McCallen, David, Sjogreen, Bjorn, Miah, Mamun

Journal:

Computing in Science & Engineering

Year:

2017

Language:

english

File:

PDF, 8.32 MB

english, 2017

50

Stable and Efficient Modeling of Anelastic Attenuation in Seismic Wave Propagation

Petersson, N. Anders, Sjögreen, Björn

Journal:

Communications in Computational Physics

Year:

2012

Language:

english

File:

PDF, 386 KB

english, 2012